ATAC-Seq Archives - Blackshaw Lab

Decomposing cell identity for transfer learning across platforms, tissues and species

ATAC-Seq, New technique, scRNA-Seq, Transcriptomics

Stein-O’Brien GL, Clark BS, Sherman T, Hu Q, Sealfon R, Wolf A, Zibetti C, Liu S, Qian J, Colantuoni C, Beer M, Blackshaw S, Goff LA, and Fertig EJ. Cell Systems, in press

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Epigenomic profiling of retinal progenitors reveals LHX2 is required for developmental regulation of open chromatin

ATAC-Seq, ChIP-Seq, Development, Lhx2, Retina, Transcription factor

Zibetti C, Liu S, Wan J, Qian J, and Blackshaw S. Comm Biology 2019, 2:142.

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A widespread decrease in chromatin accessibility in age-related macular degeneration

ATAC-Seq, Neurodegeneration, Photoreceptor, Retina, RPE

Wang J, Zibetti C, Shang P, Sripathi SR, Zhang P, Cano M, Ji H, Merbs SL, Zack DJ, Handa J, Sinha D, Blackshaw S* and Qian J*. Nat Comm 2018 9:1364 (* indicates co-corresponding author).

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BPAC: A universal model for prediction of transcription factor binding sites based on chromatin accessibility

ATAC-Seq, New technique, Transcription factor

Liu S, Zibetti C, Wan J, Wang G, Blackshaw S, and Qian J. BMC Bioinformatics 2017 18:355.

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Blackshaw Lab

Building and Rebuilding the Retina and Hypothalamus

Category: <span>ATAC-Seq</span>

Decomposing cell identity for transfer learning across platforms, tissues and species

Epigenomic profiling of retinal progenitors reveals LHX2 is required for developmental regulation of open chromatin

A widespread decrease in chromatin accessibility in age-related macular degeneration

BPAC: A universal model for prediction of transcription factor binding sites based on chromatin accessibility