Clustering Analysis of SAGE data: A Poisson Approach
Cai L, Huang H, Blackshaw S, Liu JS, Cepko CL, Wong WH. Genome Biol 2004; 5:R51.
Genomic analysis of mouse retinal development
Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho S-H, Yung R, Asch E, Wong WH, Cepko CL. PLoS Biol 2004; 2:E247.
MicroSAGE is highly representative and reproducible, but reveals major differences in gene expression between samples obtained from identical tissues
Blackshaw S, Kuo WP, Park PJ, Tsujikawa M, Gunnersen JM, Scott HS, Wee- Boon M, Tan SS, Cepko CL. Genome Biol 2003 4:R17.
Profile of the genes expressed in the human peripheral retina, macula, and retinal pigment epithelium determined through serial analysis of gene expression (SAGE)
Sharon D*, Blackshaw S*, Cepko CL, Dryja TP. Proc Natl Acad Sci USA 2002 99:315-20 (* indicates equal contribution by both authors).
Applying genomic technologies to neural development
Blackshaw S, Livesey FJ. Current Opinion in Neurobiology. 2002 6:110-14.
Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes
Blackshaw S, Fraioli RE, Furukawa T, Cepko CL. Cell 2001 107:579-89.
A comparison of SAGE and microarray technologies. In DNA microarrays: the new frontier in gene discovery and gene expression analysis
Cepko CL, Blackshaw S, Livesey FJ. Soc Neuroscience Press 2001.