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Blackshaw Lab

Building and Rebuilding the Retina and Hypothalamus

  • Home
  • Research
  • Publications
  • Members
  • Datasets & Techniques
  • Home
  • Research
  • Publications
  • Members
  • Datasets & Techniques

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A genomic atlas of mouse hypothalamic development

Development, Hypothalamus, Neurogenesis, Shh, Spatial patterning, Thalamus, Transcription factor, Transcriptomics

Shimogori T, Lee D A, Miranda-Angulo A, Yang Y, Yoshida A, Jiang L, Kataoka A, Wang H, Mashiko H, Avetisyan M A, Qi L, Qian J, and Blackshaw S. Nat Neurosci 2010 13:767-75.

Link to Article>> View PDF>>

The long noncoding RNA RNCR2 directs mouse retinal cell specification

Cell fate, Development, lncRNAs, Retina

Rapicavoli N, Poth E, Blackshaw S. BMC Dev Biol 2010 10:49

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hPDI: a database of experimental human protein-DNA interactions

New technique, Protein microarray

Xie Z, Hu S, Blackshaw S, Zhu H, Qian J. Bioinformatics 2010 26:287-89.

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Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling

New technique, Protein microarray, Transcription factor

Hu S, Xie Z, Onishi A, Jiang L, Wang H, He X, Rho H-S, Woodard C, Yu X, Lin J, Long S, Blackshaw S, Qian J, Zhu H*. Cell 2009 139:610-22 (* indicates corresponding author).

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Muscleblind-like 2: Circadian expression in the mammalian pineal gland is controlled by an adrenergic-cAMP mechanism

Circadian, RNA binding proteins, Signal transduction

Kim JS, Coon SL, Weller JL, Blackshaw S, Rath MF, Mrller M, Klein DC. J Neurochem 2009 110:756-64.

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Pias3 directs rod photoreceptor development via SUMOylation of Nr2e3

Cell fate, Development, Photoreceptor, SUMOylation, Transcription factor

Onishi A, Peng GH, Du CH, Alexis U, Chen S, Blackshaw S. Neuron 2009 61:234-46.

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New meaning in the message: noncoding RNAs and their role in retinal development

Development, lncRNAs, Review article

Rapicavoli NA, Blackshaw S. Dev Dynam, 2009 238:2103-14.

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Molecular pathways controlling development of thalamus and hypothalamus: from neural specification to circuit formation

Development, Hypothalamus, Review article

Blackshaw S, Scholpp S, Placzek M, Ingraham H, Simerly R, Shimogori T. J Neurosci. 2010 30:14925-30.

Link to Article>> View PDF>>

D-Aspartate and D-Aspartate oxidase show selective and developmentally dynamic localization in mouse retina

D-Amino acids, Neurotransmitters, Retina

Huang AS, Lee DA, Blackshaw S. Exp Eye Res 2008 86:704-9.

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Development of vertebrate retina and hypothalamus

Development, Hypothalamus, Retina, Review article

Byerly MS, Blackshaw S. Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2009 1:380-9.

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Research Areas

  • AAV
  • Antibody specificity
  • ATAC-Seq
  • Autoimmune disease
  • Behavior
  • Book Chapter
  • Cell fate
  • Cell lineage analysis
  • Chemical senses
  • Chemogenetics
  • ChIP-Seq
  • Circadian
  • Commentary
  • D-Amino acids
  • Development
  • Diabetes
  • Extraretinal photoreceptors
  • FGF
  • Human genetics
  • Hypothalamus
  • In vivo electroporation
  • Lens
  • Lhx2
  • lncRNAs
  • Metabolism
  • Muller glia
  • Neural circuitry
  • Neural development
  • Neurodegeneration
  • Neurogenesis
  • Neurotransmitters
  • New technique
  • Nitric oxide
  • Notch/Delta
  • Nucleogenesis
  • Photoreceptor
  • Protein microarray
  • Proteomics
  • Protocol
  • Radial glia
  • Retina
  • Review article
  • RNA binding proteins
  • RNA splicing
  • RPE
  • SAGE
  • scRNA-Seq
  • Shh
  • Signal transduction
  • Sleep
  • Spatial patterning
  • SUMOylation
  • Suprachiasmatic nucleus
  • Tanycytes
  • Thalamus
  • Transcription factor
  • Transcriptomics
  • Visual cycle
  • Wnt

Recent Posts

  • Cell-specific regulation of gene expression using splicing-dependent frameshifting
  • Ectopic insert-dependent neuronal expression of GFAP promoter-driven AAV constructs in adult mouse retina
  • LRLoop: A method to predict feedback loops in cell-cell communication
  • Notch Inhibition Promotes Regeneration and Immunosuppression Supports Cone Survival in a Zebrafish Model of Inherited Retinal Dystrophy
  • Genetic loss of function of Ptbp1 does not induce glia-to-neuron conversion in retina

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