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Blackshaw Lab

Building and Rebuilding the Retina and Hypothalamus

  • Home
  • Research
  • Publications
  • Members
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  • Research
  • Publications
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Functional protein microarray technology

Protein microarray, Proteomics, Review article

Hu S, Xie Z, Qian J, Blackshaw S, Zhu H. Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2010 3:255-68.

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Behavioral alterations in male mice lacking the gene for D-aspartate oxidase

D-Amino acids, Neurotransmitters

Weil Z, Huang AS, Beigneaux A, Kim PM, Molliver ME, Blackshaw S, Young SG, Nelson RJ, Snyder SH. Behav Brain Res 2006; 171:295-302.

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Serial Analysis of Gene Expression

Protocol, SAGE

Blackshaw S, Kim JB, St. Croix B, Polyak K. Current Protocols in Human Genetics, Unit 11.6 2007.

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Serial Analysis of Gene Expression

Protocol, SAGE

Blackshaw S, Kim JB, St. Croix B, Polyak K. Current Protocols in Molecular Biology, Unit 25B.6 2007.

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D-aspartate regulates melanocortin formation and function: behavioral alterations in D-aspartate oxidase mutant mice

D-Amino acids, Neurotransmitters

Huang AS, Beigneaux A, Weil Z, Kim PM, Molliver ME, Blackshaw S, Young SG, Nelson RJ, Snyder SH. J Neurosci 2006; 26:2814-9.

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Methionine Adenosyltransferase (MAT): Adrenergic-cyclic AMP Mechanism Mediates Control of a Daily Rhythm in Pineal Expression

Circadian, Signal transduction

Kim JS, Coon SL, Blackshaw S, Cepko CL, Moller M, Mukda S, Zhao W-Q, Charlton CG, Klein DC. J Biol Chem 2005; 280:677-84.

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“SAGE,” in Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics

Review article, SAGE

Blackshaw S. (Quackenbush, J, Little P, eds), John Wiley/ Sons 2005.

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“Developmental Genomics,” in Mechanisms of Retinal Development

Development, Retina, Review article

Blackshaw S. (Sernagor E, Eglen S, Harris W, Wong R. eds), Cambridge University Press 2006.

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Clustering Analysis of SAGE data: A Poisson Approach

New technique, SAGE, Transcriptomics

Cai L, Huang H, Blackshaw S, Liu JS, Cepko CL, Wong WH. Genome Biol 2004; 5:R51.

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Genomic analysis of mouse retinal development

Cell fate, Development, lncRNAs, Neurogenesis, Retina, SAGE, Transcriptomics

Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho S-H, Yung R, Asch E, Wong WH, Cepko CL. PLoS Biol 2004; 2:E247.

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Research Areas

  • AAV
  • Antibody specificity
  • ATAC-Seq
  • Autoimmune disease
  • Behavior
  • Book Chapter
  • Cell fate
  • Cell lineage analysis
  • Chemical senses
  • Chemogenetics
  • ChIP-Seq
  • Circadian
  • Commentary
  • D-Amino acids
  • Development
  • Diabetes
  • Extraretinal photoreceptors
  • FGF
  • Human genetics
  • Hypothalamus
  • In vivo electroporation
  • Lens
  • Lhx2
  • lncRNAs
  • Metabolism
  • Muller glia
  • Neural circuitry
  • Neural development
  • Neurodegeneration
  • Neurogenesis
  • Neurotransmitters
  • New technique
  • Nitric oxide
  • Notch/Delta
  • Nucleogenesis
  • Photoreceptor
  • Protein microarray
  • Proteomics
  • Protocol
  • Radial glia
  • Retina
  • Review article
  • RNA binding proteins
  • RNA splicing
  • RPE
  • SAGE
  • scRNA-Seq
  • Shh
  • Signal transduction
  • Sleep
  • Spatial patterning
  • SUMOylation
  • Suprachiasmatic nucleus
  • Tanycytes
  • Thalamus
  • Transcription factor
  • Transcriptomics
  • Visual cycle
  • Wnt

Recent Posts

  • Cell-specific regulation of gene expression using splicing-dependent frameshifting
  • Ectopic insert-dependent neuronal expression of GFAP promoter-driven AAV constructs in adult mouse retina
  • LRLoop: A method to predict feedback loops in cell-cell communication
  • Notch Inhibition Promotes Regeneration and Immunosuppression Supports Cone Survival in a Zebrafish Model of Inherited Retinal Dystrophy
  • Genetic loss of function of Ptbp1 does not induce glia-to-neuron conversion in retina

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